Affymetrix snp 6.0 copy number

2019-11-21 05:55

The Affymetrix SNP Array 6. 0 allows cytogenetic researchers to capture more chromosomal aberrations with highdensity SNPs and highresolution copy number coverage on a single array. The process requires only two primary steps: preparing the DNA for the microarray using the cytogenetics copy number assay, andEach point in Figure Figure1 1 represents a locus (SNP) on the Affymetrix 6. 0 SNP array. As expected for germline data, the locuslevel copy number data are randomly scattered around a value of two, which represents the normal twocopy state. affymetrix snp 6.0 copy number

Oct 31, 2016 For the Affymetrix SNP 6. 0 platform, a set of 947 cancer cell lines 23 published by the Broad Institute, Massachusetts (GEO accession number: GSE ) was analyzed using Affymetrix Power Tools, Nexus Copy Number and Rawcopy.

The new Affymetrix GenomeWide Human SNP Array 6. 0 features 1. 8 million genetic markers, including more than 906, 600 single nucleotide polymorphisms (SNPs) and more than 946, 000 probes for the detection of copy number variation. The GenomeWide Human SNP Array 6. 0 contains more than 906, 600 single nucleotide polymorphisms (SNPs) and more than 946, 000 probes for the detection of copy number variation.affymetrix snp 6.0 copy number Note: Affymetrix is providing alternative CDF files, for the Affymetrix genotyping array GenomeWide Human SNP Array 5. 0. These CDF files provide uniform access to the Copy Number probe content by presenting one probe per probeset in both the full and default updated CDF files.

Affymetrix snp 6.0 copy number free

The way the CN probes are represented in the. Full CDF for SNP 5. 0 is considered experimental and may change to be consistent with SNP 6. 0 in future Affymetrix has no immediate plans to develop and validate a copy number solution in APT or any other software for SNP 5. 0. affymetrix snp 6.0 copy number Affymetrix SNP 6. 0 Description Affymetrix GenomeWide Human SNP Array 6. 0 is a commercial SNP Array product by Affymetrix containing genetic markers, including single nucleotide polymorphisms (SNPs) and probes for the detection of copy number variation. Affymetrix SNP 6. 0 data also come with the great advantage that they can be used for both genotype and copy number analysis. Another advantage of this technology is that it allows us to characterise both copy number changes and allelic imbalances of a sample.

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